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Dessert / Melt-in-Your-Mouth Fluffy Japanese Cotton Cheesecake Cupcakes

Melt-in-Your-Mouth Fluffy Japanese Cotton Cheesecake Cupcakes

Fluffy Japanese Cotton Cheesecake Cupcakes are an absolute revelation for anyone who appreciates a dessert that perfectly balances elegance with an utterly unique texture. Forget everything you thought you knew about cheesecake; these miniature marvels redefine the experience entirely. Imagine a dessert so incredibly light and airy it practically melts on your tongue, yet delivers that signature creamy tang we all adore, all wrapped up in a charming, individual portion.

Originating from Japan, these exquisite cheesecakes, often referred to as ‘soufflé cheesecakes,’ quickly captivated the world with their distinctive, wobbly texture. They earned the endearing ‘cotton’ moniker due to their incredible softness and ethereal lightness, standing in delightful contrast to their denser, more traditional Western counterparts. There’s a beautiful simplicity in their preparation that yields truly profound results.

Why These Cupcakes Are a Must-Try
The true genius of transforming this beloved classic into Fluffy Japanese Cotton Cheesecake Cupcakes lies in their irresistible convenience and impeccable presentation. Each bite offers a harmonious blend of subtle sweetness, delicate creaminess, and an unparalleled, cloud-like texture that truly sets them apart. They are ideal for elegant gatherings, a delightful afternoon treat, or simply to satisfy a sophisticated sweet craving. I promise, once you experience their unparalleled texture and subtly sweet flavor, you’ll understand why this recipe has become a global sensation and why everyone falls in love with their delicate charm.

Melt-in-Your-Mouth Fluffy Japanese Cotton Cheesecake Cupcakes this Recipe

Ingredients:

  • For the Cheesecake Batter:
    • 200g (about 7 oz) cream cheese, softened at room temperature
    • 50g (about 3.5 tbsp) unsalted butter
    • 80ml (about 1/3 cup) whole milk
    • 60g (about 1/2 cup) all-purpose flour, sieved
    • 4 large egg yolks (from approximately 60g/2.1 oz eggs)
    • 1 tsp vanilla extract
    • A pinch of salt
  • For the Meringue:
    • 4 large egg whites (from approximately 60g/2.1 oz eggs)
    • 80g (about 1/3 cup + 2 tbsp) granulated sugar
    • 1/2 tsp cream of tartar (optional, for meringue stability)

Equipment You’ll Need:

  • 12-cup standard muffin tin
  • 12 standard paper cupcake liners or silicone liners
  • Large roasting pan (larger than your muffin tin, for a water bath)
  • Large mixing bowls (at least 3: one for the cream cheese mixture, one for egg yolks, one for egg whites)
  • Small saucepan or double boiler setup
  • Fine-mesh sieve
  • Handheld electric mixer or stand mixer with a whisk attachment
  • Rubber spatula
  • Whisk
  • Measuring cups and spoons
  • Oven thermometer (highly recommended for accuracy)

Preparing for the Fluffy Japanese Cotton Cheesecake Cupcakes:

  1. Preheat Your Oven and Prepare the Water Bath: First things first, let’s get our oven ready. Preheat your oven to a gentle 160°C (325°F) with a rack in the middle position. This lower temperature is crucial for achieving that signature fluffy texture without over-browning. While the oven warms, place a large roasting pan on the bottom rack of your oven. You’ll fill this with hot water later to create the all-important water bath. A water bath, also known as a bain-marie, provides a moist, even heat that prevents cracks and ensures your Fluffy Japanese Cotton Cheesecake Cupcakes cook gently and evenly, resulting in an incredibly smooth, melt-in-your-mouth interior.
  2. Line Your Muffin Tin: Prepare your 12-cup standard muffin tin by lining each well with a paper cupcake liner or silicone liner. I often lightly spray the inside of the paper liners with a non-stick cooking spray for extra insurance, although it’s not strictly necessary. This step ensures easy removal and makes individual servings of your delicious Fluffy Japanese Cotton Cheesecake Cupcakes a breeze.
  3. Separate Eggs and Measure Ingredients: This is a crucial step for success. Carefully separate your four large eggs, placing the egg yolks into one medium-sized bowl and the egg whites into a very clean, grease-free large mixing bowl. It’s incredibly important that not even a speck of egg yolk makes it into your egg whites, as any fat will prevent your meringue from whipping up properly. Cover the egg whites and set them aside at room temperature, as slightly warmer egg whites whip up with more volume. Measure out all your other ingredients: make sure your cream cheese is softened, your butter is at room temperature (or cut into small pieces), milk is measured, flour is sieved, and sugar is ready. Having everything prepped before you start mixing will make the process much smoother and more enjoyable.

Crafting the Silky Cheesecake Batter:

  1. Melt Cream Cheese, Butter, and Milk: In a medium heat-proof bowl, combine your softened cream cheese, unsalted butter, and whole milk. Place this bowl over a small saucepan containing about an inch or two of simmering water, creating a double boiler. Ensure the bottom of the bowl does not touch the water. Gently stir the mixture with a heat-resistant rubber spatula or a whisk until the cream cheese and butter are completely melted and the mixture is smooth and lump-free. This process ensures a wonderfully creamy base for your Fluffy Japanese Cotton Cheesecake Cupcakes and helps prevent any separation. Once perfectly smooth, remove the bowl from the heat and set it aside to cool slightly for about 5-10 minutes. It’s important that the mixture isn’t too hot when you add the egg yolks.
  2. Incorporate Sieved Flour: Once the cream cheese mixture has cooled slightly (it should still be warm to the touch, but not scorching hot), add your sieved all-purpose flour directly into the bowl. Whisk vigorously until the mixture is entirely smooth, thick, and free of any lumps. Sifting the flour beforehand is key here, as it prevents lumps and ensures a silky-smooth batter. This stage creates a roux-like base, which contributes to the custardy texture of your Fluffy Japanese Cotton Cheesecake Cupcakes.
  3. Add Egg Yolks and Vanilla: Now, one by one, whisk in your four egg yolks into the flour-cream cheese mixture. Whisk well after each addition to ensure it’s fully incorporated. The mixture will become beautifully glossy and even smoother. Finally, stir in the vanilla extract and a pinch of salt. The vanilla adds a lovely aroma and flavor, while the salt balances the sweetness. Once all the egg yolks are incorporated, you should have a rich, thick, and utterly smooth cheesecake batter base. Cover the bowl with plastic wrap to prevent a skin from forming and set it aside.

Whipping Up the Cloud-Like Meringue:

  1. Prepare the Egg Whites: Remember those egg whites you set aside? Ensure your large mixing bowl and whisk attachments are immaculately clean and grease-free. Even a tiny bit of fat can ruin your meringue. If using, add the cream of tartar to the egg whites; this acid helps stabilize the meringue.
  2. Whip Egg Whites to Soft Peaks: Using your electric mixer on medium speed, begin to whip the egg whites. They will start to get frothy and foamy. Continue whipping until they turn white and opaque, forming very soft peaks. At this stage, if you lift the whisk, the peaks will barely hold their shape and immediately flop over. This is the perfect time to start adding sugar.
  3. Gradually Add Sugar for Stiff, Glossy Peaks: With the mixer still running on medium-high speed, gradually add the granulated sugar, about a tablespoon at a time, allowing each addition to fully dissolve before adding the next. This slow incorporation helps create a stable, fine-textured meringue. Continue whipping until the meringue is glossy, firm, and forms stiff peaks. When you lift the whisk, the peaks should stand upright and hold their shape without flopping. The meringue should look like a beautiful, shiny cloud. Don’t over-whip, as this can make the meringue dry and difficult to fold. You’re looking for firm, but still somewhat pliable, peaks for the perfect consistency in your Fluffy Japanese Cotton Cheesecake Cupcakes.

Gently Combining for Ultimate Fluffiness:

  1. Lighten the Cheesecake Batter: Take about one-third of your beautifully whipped meringue and add it to your thick cheesecake batter. Using your rubber spatula, gently fold it in until just combined. Don’t worry too much about being perfectly gentle at this stage; this step is primarily to lighten the batter, making it easier to incorporate the rest of the meringue without deflating it too much.
  2. Fold in Remaining Meringue: Now, add the remaining meringue to the lightened cheesecake batter. This is where patience and a gentle hand are paramount for achieving the signature fluffiness of Japanese Cotton Cheesecake Cupcakes. Using your rubber spatula, gently fold the meringue into the batter with an upward motion, scraping the bottom of the bowl and turning it over. Continue folding until there are no visible streaks of meringue, but be careful not to overmix. Overmixing will deflate the meringue and result in a denser cupcake. The final batter should be airy, light, and uniformly pale yellow.

Baking Your Fluffy Japanese Cotton Cheesecake Cupcakes to Perfection:

  1. Fill the Cupcake Liners: Carefully and evenly spoon the airy cheesecake batter into each of your prepared cupcake liners. I usually fill them about two-thirds to three-quarters full. Give the muffin tin a gentle tap on the counter a couple of times to release any large air bubbles that might be trapped inside. This helps ensure a smooth, even top on your Fluffy Japanese Cotton Cheesecake Cupcakes.
  2. Prepare the Water Bath and Bake (First Stage): Carefully place your muffin tin filled with batter into the large roasting pan that’s already on the bottom rack of your oven. Now, carefully pour hot water into the roasting pan, around the muffin tin, until it reaches about halfway up the sides of the cupcake liners. Be very careful not to get any water into the cheesecake batter. The water should be hot, but not necessarily boiling. Close the oven door. Bake your Fluffy Japanese Cotton Cheesecake Cupcakes at 160°C (325°F) for the first 20 minutes. During this initial phase, the cupcakes will start to rise beautifully and set their structure.
  3. Reduce Temperature and Continue Baking (Second Stage): After 20 minutes, without opening the oven door, reduce the oven temperature to 130°C (275°F). Continue baking for another 35-45 minutes. The exact baking time can vary depending on your oven, so keep a close eye on them. The cupcakes are done when they are beautifully golden on top, puffed up, and a wooden skewer inserted into the center comes out clean or with moist crumbs attached, but not wet batter. They might wobble slightly in the center, which is perfectly normal for a cotton cheesecake; it indicates a custardy, tender interior. This two-stage baking method is crucial for achieving that characteristic soft, jiggly texture of Fluffy Japanese Cotton Cheesecake Cupcakes.
  4. Cooling in the Oven: Once the baking time is complete, turn off your oven. Prop the oven door open slightly with a wooden spoon or heat-proof utensil, allowing the cupcakes to cool down gradually inside the oven for another 15-20 minutes. This slow cooling process helps prevent drastic temperature changes, which can cause the cupcakes to crack or sink excessively, maintaining their fluffy structure.

Cooling and Enjoying Your Japanese Cotton Cheesecake Cupcakes:

  1. Initial Cooling Outside the Oven: After the gentle cool-down period in the oven, carefully remove the muffin tin from the roasting pan. Transfer the Fluffy Japanese Cotton Cheesecake Cupcakes in their liners to a wire rack to cool completely at room temperature. They will likely deflate a bit as they cool, which is entirely expected and part of their charm. Don’t worry, they will still be incredibly fluffy and delicious!
  2. Chill for Best Texture and Flavor: Once your cupcakes have reached room temperature, you can technically enjoy them. However, for the absolute best experience and that iconic melt-in-your-mouth texture, gently remove them from their muffin tin (they should come out easily) and place them in an airtight container. Refrigerate them for at least 3-4 hours, or even better, overnight. Chilling allows the flavors to meld and the texture to fully set, transforming them into the truly decadent Fluffy Japanese Cotton Cheesecake Cupcakes you’ve been dreaming of.
  3. Serve and Enjoy: When you’re ready to serve, take them out of the refrigerator a little while before eating to let them soften slightly, or enjoy them chilled. These Fluffy Japanese Cotton Cheesecake Cupcakes are exquisite on their own, perhaps with a dusting of powdered sugar, or a side of fresh berries. They are light, airy, and utterly delightful – a perfect individual treat!
  4. Storage: Store any leftover Fluffy Japanese Cotton Cheesecake Cupcakes in an airtight container in the refrigerator for up to 3-4 days. While they are best enjoyed fresh, they retain their wonderful texture and flavor for a few days, making them perfect for meal prepping a week’s worth of delightful desserts.

Melt-in-Your-Mouth Fluffy Japanese Cotton Cheesecake Cupcakes

Conclusion

Well, my friends, we’ve reached the sweet finale of our culinary journey, and I genuinely hope you’re as excited as I am about what we’ve discovered. This recipe isn’t just about baking; it’s about crafting an experience, a moment of pure, unadulterated dessert bliss. I truly believe that once you taste these incredible treats, you’ll understand exactly why I’ve been so enthusiastic about them. They defy expectations, turning what might seem like a simple cheesecake into something utterly extraordinary. You’re not just making a dessert; you’re creating edible clouds of joy that will float onto your plate and gently melt in your mouth, leaving behind a subtle, sweet, and profoundly satisfying flavor.

So, why is this recipe an absolute must-try for your kitchen? It’s simple: the texture. This isn’t your dense, New York-style cheesecake; it’s an entirely different universe of deliciousness. Imagine a dessert that is unbelievably light, impossibly airy, and yet profoundly rich in flavor. That delicate, almost jiggly texture is what makes these Fluffy Japanese Cotton Cheesecake Cupcakes a showstopper. They have a characteristic subtle sweetness that allows the natural dairy notes to shine through, creating a sophisticated profile that appeals to everyone. Each bite is a whisper of flavor, a gentle caress on the palate that leaves you feeling satisfied but never heavy. It’s an elegant dessert that proves you don’t need excessive sugar or fat to achieve a truly memorable taste and sensation. Trust me, the joy of pulling these beautifully golden-brown, puffed-up cupcakes from the oven is a reward in itself, a testament to the magic that happens when simple ingredients are treated with care and precision.

Now, let’s talk about enjoying these beauties. While they are absolutely perfect on their own, perhaps dusted with a whisper of powdered sugar for an elegant touch, their versatility is one of their most charming qualities. For a simple yet stunning presentation, I love serving them with a handful of fresh berries – think vibrant raspberries, blueberries, or sliced strawberries – which add a wonderful pop of color and a touch of tartness to complement the cheesecake’s sweetness. A dollop of lightly sweetened whipped cream or a spoonful of a homemade fruit compote (apricot or peach works wonders!) can elevate them into an even more luxurious treat. If you’re feeling a bit adventurous, try a delicate drizzle of melted white chocolate or a very light caramel sauce. For those who adore a bit of citrus, a few finely grated lemon or orange zest threads sprinkled over the top just before serving can brighten the entire experience. And if you’re making these for a tea party or a special brunch, consider a light matcha dusting for an authentic Japanese touch, or a tiny sprinkle of cocoa powder for a subtle chocolate hint.

These cupcakes are also fantastic for making ahead. They keep beautifully in the refrigerator for a few days, making them perfect for entertaining or simply having a delightful treat on hand for those moments when a sweet craving strikes. They make wonderful edible gifts too – imagine wrapping a few of these delicate delights in a pretty box for a friend or loved one. The smile on their face will be priceless!

So, my dear bakers, what are you waiting for? I wholeheartedly encourage you to roll up your sleeves, gather your ingredients, and embark on this delightful baking adventure. You’re not just following a recipe; you’re creating something truly special, a dessert that will impress and delight everyone who tries it. I have poured my heart into perfecting this method, and I am confident that you will achieve fantastic results. Don’t be shy about sharing your triumphs! I absolutely love seeing your creations. Please do take photos of your finished Fluffy Japanese Cotton Cheesecake Cupcakes and share them with me. Tell me about your baking experience, your favorite serving suggestions, or any fun variations you tried. Your feedback and stories are what make this culinary community so vibrant and inspiring. Happy baking, and I can’t wait to hear all about your delicious journey!


Fluffy Japanese Cotton Cheesecake Cupcakes

Fluffy Japanese Cotton Cheesecake Cupcakes

These Fluffy Japanese Cotton Cheesecake Cupcakes bring a touch of elegance to any dessert table. Soft, airy, and subtly sweet, they’re a beautiful blend of cheesecake richness with the lightness of a soufflé. Perfectly portioned and delicately golden on top, these cupcakes are ideal for afternoon tea, parties, or a simple after-dinner treat. Their texture is unmatched—like biting into a cloud that leaves a creamy finish on the tongue.

Prep Time
1 Hours
Cook Time
15 Minutes
Total Time
15 Minutes
Servings
12 cupcakes

Ingredients

  • 225g (8 oz) cream cheese, softened
  • 60g (1/4 cup) unsalted butter, softened
  • 120ml (1/2 cup) whole milk
  • 60g (1/2 cup) all-purpose flour, sieved
  • 30g (1/4 cup) cornstarch
  • 4 large egg yolks
  • 1 tsp vanilla extract
  • A pinch of salt
  • 4 large egg whites
  • 100g (1/2 cup) granulated sugar
  • 1/2 tsp cream of tartar (optional)

Instructions

  1. Step 1
    Preheat your oven to a gentle 160°C (325°F) with a rack in the middle position. Place a large roasting pan on the bottom rack of your oven to prepare for the water bath.
  2. Step 2
    Prepare your 12-cup standard muffin tin by lining each well with a paper or silicone cupcake liner. Optionally, lightly spray paper liners with a non-stick cooking spray for extra insurance.
  3. Step 3
    Carefully separate four large eggs, placing the egg yolks into one medium-sized bowl and the egg whites into a very clean, grease-free large mixing bowl. Cover the egg whites and set aside at room temperature. Measure out all your other ingredients.
  4. Step 4
    In a medium heat-proof bowl, combine your softened cream cheese, unsalted butter, and whole milk. Place this bowl over a small saucepan containing simmering water (double boiler). Gently stir until the cream cheese and butter are completely melted and the mixture is smooth and lump-free. Remove from heat and set aside to cool slightly for about 5-10 minutes (mixture should not be too hot).
  5. Step 5
    Once the cream cheese mixture has cooled slightly, add your sieved all-purpose flour and cornstarch directly into the bowl. Whisk vigorously until the mixture is entirely smooth, thick, and free of any lumps.
  6. Step 6
    One by one, whisk in your four egg yolks into the flour-cream cheese mixture, ensuring each is fully incorporated. The mixture will become beautifully glossy and even smoother. Finally, stir in the vanilla extract and a pinch of salt. Cover the bowl with plastic wrap and set it aside.
  7. Step 7
    Ensure your large mixing bowl and whisk attachments are immaculately clean and grease-free for the meringue. If using, add the cream of tartar to the egg whites; this helps stabilize the meringue.
  8. Step 8
    Using your electric mixer on medium speed, begin to whip the egg whites. Continue whipping until they turn white and opaque, forming very soft peaks that barely hold their shape.
  9. Step 9
    With the mixer still running on medium-high speed, gradually add the granulated sugar, about a tablespoon at a time, allowing each addition to fully dissolve. Continue whipping until the meringue is glossy, firm, and forms stiff peaks that stand upright and hold their shape. Do not over-whip.
  10. Step 10
    Take about one-third of your beautifully whipped meringue and add it to your thick cheesecake batter. Using your rubber spatula, gently fold it in until just combined. This step lightens the batter, making it easier to incorporate the rest of the meringue without deflating it too much.
  11. Step 11
    Now, add the remaining meringue to the lightened cheesecake batter. Gently fold the meringue into the batter with an upward motion, scraping the bottom of the bowl and turning it over. Continue folding until there are no visible streaks of meringue, but be careful not to overmix.
  12. Step 12
    Carefully and evenly spoon the airy cheesecake batter into each of your prepared cupcake liners, filling them about two-thirds to three-quarters full. Give the muffin tin a gentle tap on the counter a couple of times to release any large air bubbles.
  13. Step 13
    Carefully place your muffin tin filled with batter into the large roasting pan that’s already on the bottom rack of your oven. Carefully pour hot water into the roasting pan, around the muffin tin, until it reaches about halfway up the sides of the cupcake liners. Bake your Fluffy Japanese Cotton Cheesecake Cupcakes at 160°C (325°F) for the first 20 minutes.
  14. Step 14
    After 20 minutes, without opening the oven door, reduce the oven temperature to 130°C (275°F). Continue baking for another 35-45 minutes. The cupcakes are done when they are beautifully golden on top, puffed up, and a wooden skewer inserted into the center comes out clean or with moist crumbs attached, but not wet batter. They might wobble slightly in the center.
  15. Step 15
    Once the baking time is complete, turn off your oven. Prop the oven door open slightly with a wooden spoon or heat-proof utensil, allowing the cupcakes to cool down gradually inside the oven for another 15-20 minutes. This slow cooling helps prevent drastic temperature changes.
  16. Step 16
    After the gentle cool-down period in the oven, carefully remove the muffin tin from the roasting pan. Transfer the cupcakes in their liners to a wire rack to cool completely at room temperature. They will likely deflate a bit as they cool.
  17. Step 17
    Once your cupcakes have reached room temperature, gently remove them from their muffin tin. Place them in an airtight container and refrigerate for at least 3-4 hours, or even better, overnight. Chilling allows the flavors to meld and the texture to fully set.
  18. Step 18
    When ready to serve, take them out of the refrigerator a little while before eating to let them soften slightly, or enjoy them chilled. These Fluffy Japanese Cotton Cheesecake Cupcakes are exquisite on their own, perhaps with a dusting of powdered sugar, or a side of fresh berries.
  19. Step 19
    Store any leftover Fluffy Japanese Cotton Cheesecake Cupcakes in an airtight container in the refrigerator for up to 3-4 days.

Important Information

Nutrition Facts (Per Serving)

It is important to consider this information as approximate and not to use it as definitive health advice.

Allergy Information

Please check ingredients for potential allergens and consult a health professional if in doubt.

October 26, 2025 by Melissa

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